Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
trxBThioredoxin reductase. (316 aa)    
Predicted Functional Partners:
trxA
Thioredoxin; Belongs to the thioredoxin family.
 
 0.990
selD
Selenide, water dikinase, selenocysteine-containing; Synthesizes selenophosphate from selenide and ATP.
   
 
 0.914
nifU
Nitrogen fixation iron-sulfur cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.865
trx-3
Thioredoxin family protein, selenocysteine-containing.
  
 
 0.842
comM
Competence ATPase ComM.
  
   0.816
prx-1
Peroxiredoxin, typical 2-Cys subfamily.
  
 
 0.799
prx-2
Peroxiredoxin, typical 2-Cys subfamily.
  
 
 0.799
trx-2
Thioredoxin family protein; Belongs to the thioredoxin family.
 
 
 0.769
GSU1698
TPR domain protein.
  
 
 0.721
GSU2124
Thioredoxin-related domain protein.
  
 
 0.716
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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