Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GSU0527 | GSU0528 | GSU0527 | GSU0528 | TrkA domain protein. | Ferredoxin and NADH nitroreductase domain protein. | 0.741 |
GSU0527 | GSU0530 | GSU0527 | GSU0530 | TrkA domain protein. | Histidine triad (HIT) family hydrolase. | 0.747 |
GSU0527 | GSU1204 | GSU0527 | GSU1204 | TrkA domain protein. | Kef-type potassium transporter, NAD-binding protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. | 0.547 |
GSU0527 | GSU2749 | GSU0527 | GSU2749 | TrkA domain protein. | NOL1/NOP2/Sun (tRNA and rRNA cytosine-C5-methyltransferase) family protein. | 0.576 |
GSU0527 | dapF | GSU0527 | GSU0531 | TrkA domain protein. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.557 |
GSU0527 | hemD | GSU0527 | GSU3286 | TrkA domain protein. | Uroporphyrinogen III C2,C7-methyltransferase and uroporphyrinogen III synthase. | 0.711 |
GSU0527 | moaE | GSU0527 | GSU2699 | TrkA domain protein. | Molybdopterin synthase, large subunit. | 0.745 |
GSU0527 | nfo | GSU0527 | GSU0529 | TrkA domain protein. | Endodeoxyribonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic (AP) sites, generating a 3'-hydroxyl group and a 5'-terminal sugar phosphate. | 0.767 |
GSU0527 | rsmB | GSU0527 | GSU3373 | TrkA domain protein. | 16S rRNA (5-methyl-C967)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.733 |
GSU0527 | selA | GSU0527 | GSU3369 | TrkA domain protein. | L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. | 0.594 |
GSU0528 | GSU0527 | GSU0528 | GSU0527 | Ferredoxin and NADH nitroreductase domain protein. | TrkA domain protein. | 0.741 |
GSU0528 | GSU0530 | GSU0528 | GSU0530 | Ferredoxin and NADH nitroreductase domain protein. | Histidine triad (HIT) family hydrolase. | 0.822 |
GSU0528 | dapF | GSU0528 | GSU0531 | Ferredoxin and NADH nitroreductase domain protein. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.529 |
GSU0528 | hemD | GSU0528 | GSU3286 | Ferredoxin and NADH nitroreductase domain protein. | Uroporphyrinogen III C2,C7-methyltransferase and uroporphyrinogen III synthase. | 0.406 |
GSU0528 | nfo | GSU0528 | GSU0529 | Ferredoxin and NADH nitroreductase domain protein. | Endodeoxyribonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic (AP) sites, generating a 3'-hydroxyl group and a 5'-terminal sugar phosphate. | 0.781 |
GSU0530 | GSU0527 | GSU0530 | GSU0527 | Histidine triad (HIT) family hydrolase. | TrkA domain protein. | 0.747 |
GSU0530 | GSU0528 | GSU0530 | GSU0528 | Histidine triad (HIT) family hydrolase. | Ferredoxin and NADH nitroreductase domain protein. | 0.822 |
GSU0530 | dapF | GSU0530 | GSU0531 | Histidine triad (HIT) family hydrolase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.553 |
GSU0530 | nfo | GSU0530 | GSU0529 | Histidine triad (HIT) family hydrolase. | Endodeoxyribonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic (AP) sites, generating a 3'-hydroxyl group and a 5'-terminal sugar phosphate. | 0.793 |
GSU1204 | GSU0527 | GSU1204 | GSU0527 | Kef-type potassium transporter, NAD-binding protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. | TrkA domain protein. | 0.547 |
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