Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GSU0551Hypothetical protein. (113 aa)    
Predicted Functional Partners:
GSU3487
Hypothetical protein.
 
     0.950
GSU0163
Hypothetical protein.
 
    0.800
GSU0164
Hypothetical protein.
  
    0.773
GSU0549
SAM-dependent methyltransferase, putative.
  
    0.686
GSU2108
Hypothetical protein.
  
    0.537
GSU0552
Reverse transcriptase.
  
    0.515
GSU2106
PglZ domain protein.
  
    0.505
GSU0887
Hypothetical protein.
  
    0.490
GSU0548
Radical SAM domain iron-sulfur cluster-binding oxidoreductase with cobalamin-binding-like domain.
  
    0.481
GSU2107
Hypothetical protein.
  
    0.432
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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