Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GSU0874Hypothetical protein. (1080 aa)    
Predicted Functional Partners:
ftsL
Cell division septum formation protein FtsL, putative; Essential cell division protein; Belongs to the FtsL family.
  
     0.715
GSU3289
Ferritin-like domain protein.
  
     0.702
cheX-3
Protein phosphoaspartate phosphatase CheX.
  
     0.669
GSU3306
Hypothetical protein.
  
    0.629
GSU3278
Pentapeptide repeat protein.
  
     0.614
GSU1932
SPOR domain protein.
  
     0.596
GSU0872
Lipoprotein, putative.
 
    0.595
GSU0858
Periplasmic energy transduction protein, TonB-related protein.
  
     0.579
lptE
Lipopolysaccharide biogenesis outer membrane chaperone lipoprotein LptE, putative.
 
    0.571
GSU0368
Outer membrane surface lipoprotein.
  
     0.565
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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