Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GSU0891Serine protease, subtilase family, DUF11 domain-containing. (780 aa)    
Predicted Functional Partners:
GSU3219
Peptidase, CARDB domain repeat-containing, putative.
 
 
 0.650
GSU1870
Sensor diguanylate cyclase, GAF domain-containing; Domains: GAF, GGDEF.
   
 
 0.628
omcZ
Cytochrome c; 8 heme-binding sites.
      
 0.584
def-2
Polypeptide formylmethionine deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
   
  
 0.581
GSU1997
Iron-sulfur cluster-binding oxidoreductase, cyano_FeS_chp family.
      
 0.580
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
     
 0.538
GSU3112
FtsK/SpoIIIE domain protein.
  
 
 0.537
GSU1251
ATS1 domain repeat protein.
  
 
 0.527
GSU0754
Hypothetical protein.
 
 
 0.526
GSU1945
Repeat-containing protein.
 
 
 
 0.506
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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