STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GSU0919Hypothetical protein. (73 aa)    
Predicted Functional Partners:
GSU3409
Hypothetical protein.
   
  
 0.790
pcnB
Nucleic acid-independent polyadenylating polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
      
 0.758
GSU3520
Hypothetical protein.
       0.664
GSU0181
Peptidoglycan L,D-transpeptidase lipoprotein, YkuD family, TPR domain-containing.
   
  
 0.596
GSU1658
Response receiver-modulated diguanylate cyclase; Domains: REC, GGDEF.
      
 0.595
GSU3350
Sensor histidine kinase response receiver diguanylate cyclase; Domains: HisKA, HATPase_c, REC, GGDEF.
   
  
 0.595
GSU2885
NHL repeat domain protein.
      
 0.593
acpP-2
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
      
 0.591
omcZ
Cytochrome c; 8 heme-binding sites.
      
 0.481
GSU0917
Protein of unknown function DUF454.
  
    0.474
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.