Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GSU0983Phage tail spike protein, putative. (218 aa)    
Predicted Functional Partners:
GSU0982
Phage protein D, putative.
  
 0.994
GSU0986
Phage baseplate outer wedge protein (acidic lysozyme), putative.
 
  
 0.972
GSU0981
Hypothetical protein.
 
  
 0.954
GSU0979
Phage tail tube protein gp19, putative.
 
  
 0.953
GSU0987
Hypothetical protein.
 
  
 0.943
GSU0976
Phage tail tube protein gp19, putative.
 
  
 0.930
GSU0975
Phage tail sheath protein, putative.
 
  
 0.923
GSU0977
Hypothetical protein.
 
    0.911
GSU0978
Hypothetical protein.
 
    0.910
GSU0985
PAAR motif-containing protein.
 
  
 0.890
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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