Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GSU0992Hypothetical protein. (980 aa)    
Predicted Functional Partners:
GSU0986
Phage baseplate outer wedge protein (acidic lysozyme), putative.
 
   0.830
GSU0979
Phage tail tube protein gp19, putative.
 
   0.773
GSU0987
Hypothetical protein.
 
   0.772
GSU0976
Phage tail tube protein gp19, putative.
 
   0.771
GSU0975
Phage tail sheath protein, putative.
 
   0.765
GSU0981
Hypothetical protein.
 
   0.746
GSU0982
Phage protein D, putative.
 
   0.739
GSU0988
Hypothetical protein.
 
   0.730
GSU0990
Hypothetical protein.
 
    0.709
GSU0985
PAAR motif-containing protein.
 
   
 0.673
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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