STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GSU1007Sensor cyclic diguanylate phosphodiesterase, GAF and GAF domain-containing; Domains: GAF, GAF, HD-GYP. (550 aa)    
Predicted Functional Partners:
GSU0537
Sensor diguanylate cyclase/phosphodiesterase, PAS domain-containing; Domains: PAS, GGDEF, EAL.
 
 
 0.975
GSU0946
Sensor diguanylate cyclase/phosphodiesterase, HAMP and PAS domain-containing; Domains: HAMP, PAS, GGDEF, EAL.
 
 
 0.971
GSU1302
Sensor histidine kinase response regulator, HAMP domain-containing, putative heme-binding site; Domains: HAMP, HisKA, HATPase_c, REC.
  
 
 0.964
GSU1656
Response receiver sensor diguanylate cyclase, PAS domain-containing; Domains: REC, PAS, GGDEF.
 
 0.963
GSU2511
Sensor diguanylate cyclase/phosphodiesterase, CHASE4 and PAS domain-containing; Domains: CHASE4, PAS, GGDEF, EAL.
 
 0.962
GSU2534
Response receiver sensor diguanylate cyclase, PAS domain-containing; Domains: REC, PAS, GGDEF.
 
 0.958
GSU1870
Sensor diguanylate cyclase, GAF domain-containing; Domains: GAF, GGDEF.
 
 0.957
GSU1655
Response receiver sensor histidine kinase response regulator, PAS and GAF domain-containing; Domains: REC, PAS, GAF, HisKA, HATPase_c, REC.
  
 
 0.955
GSU2016
Sensor diguanylate cyclase/phosphodiesterase, PAS domain-containing; Domains: PAS, GGDEF, EAL.
 
 
 0.953
GSU1555
Sensor histidine kinase response regulator, 5TM, PAS, PAS, GAF and PAS domain-containing; Domains: 5TM, PAS, PAS, GAF, PAS, HisKA, HATPase_c, REC.
 
 
 0.948
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.