Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilX-1Type IV pilus minor pilin PilX. (172 aa)    
Predicted Functional Partners:
gspJ
Type II secretion system minor pseudopilin GspJ.
  
 
 0.888
pilV-1
Type IV pilus minor pilin PilV.
  
 
 0.868
pilY1-1
Type IV pilus assembly protein PilY1.
  
    0.776
pilW-1
Type IV pilus minor pilin PilW.
  
  
 0.775
gspI
Type II secretion system minor pseudopilin GspI.
  
 
 0.491
gspG
Type II secretion system major pseudopilin GspG.
  
 
 0.491
pulG
Type II secretion system pseudopilin PulG.
  
 
 0.491
pilV-2
Type IV pilus minor pilin PilV.
  
 
 0.491
tklG
Type II secretion system pseudopilin TklG.
  
 
 0.491
GSU1062
Cytochrome c, 1 heme-binding site.
  
    0.403
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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