STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GSU1261ABC transporter, ATP-binding protein. (227 aa)    
Predicted Functional Partners:
GSU1260
ABC transporter, membrane protein.
 
 
 0.970
GSU3485
ABC transporter, membrane protein.
 
 0.964
GSU1262
Membrane protein, putative.
 
     0.914
GSU1259
Hypothetical protein.
 
     0.910
GSU1258
NosL family protein.
 
    0.904
GSU0677
ABC transporter, membrane protein.
 
 0.874
GSU1340
ABC transporter, membrane protein.
 
 
 0.794
GSU1164
ABC transporter, membrane protein.
 
 
 0.754
GSU1163
ABC transporter, membrane protein.
 
 0.709
GSU0948
ABC transporter, membrane protein, putative.
  
 
 0.673
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.