STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nikONickel ABC transporter, ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity). (249 aa)    
Predicted Functional Partners:
nikQ
Nickel ABC transporter, membrane protein NikQ.
 
 0.999
nikMN
Nickel ABC transporter, membrane protein NikMN.
 
 0.995
cbiQ
Cobalt ABC transporter, membrane protein CbiQ.
 
 0.995
cbiMN
Cobalt ABC transporter, membrane protein CbiMN; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.
 
 0.989
cbiO
Cobalt ABC transporter, ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).
  
  
 
0.912
ybhF-C
ABC transporter, ATP-binding protein.
 
   
0.779
GSU1282
Outer membrane channel, putative.
  
    0.710
truA
tRNA pseudouridines 38,39,40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.604
GSU2985
Divalent manganese/zinc ABC transporter, ATP-binding protein.
  
 
0.602
GSU2413
ABC transporter, ATP-binding protein.
 
   
0.555
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.