STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GSU1419Helix-turn-helix XRE domain protein. (142 aa)    
Predicted Functional Partners:
GSU1420
rRNA methyltransferase, YqxC-related, putative.
  
  
 0.755
hinT
Purine nucleoside phosphoramidase.
 
    0.755
sbcC-1
DNA repair exonuclease SbcCD, C subunit, putative.
       0.725
sbcD-1
DNA repair exonuclease SbcCD, D subunit, putative.
     
 0.724
GSU1702
ROK domain transcriptional regulator/sugar kinase.
  
   
 0.655
GSU1424
Protein of unknown function, DUF4124-containing.
       0.647
GSU3109
Helix-turn-helix transcriptional regulator, IclR family.
  
  
 0.646
GSU1072
Helix-turn-helix transcriptional regulator, IclR family.
  
  
 0.645
GSU2354
Helix-turn-helix transcriptional regulator, IclR family.
  
  
 0.645
GSU0625
Helix-turn-helix transcriptional regulator, putative.
   
 
 0.637
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.