STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xapHABC transporter, ATP-binding protein. (422 aa)    
Predicted Functional Partners:
xapG
ABC transporter, membrane protein, ABC-2 family.
 
 0.999
GSU1500
Hypothetical protein; xapC.
  
  
 0.938
GSU2248
Hypothetical protein.
  
 
 0.852
xapF
Glycosyltransferase.
 
  
 0.833
GSU1842
Periplasmic polysaccharide biosynthesis/export protein.
  
  
 0.820
GSU1985
Periplasmic polysaccharide biosynthesis/export protein.
  
  
 0.820
xapI
SAM-dependent methyltransferase, FkbM family.
  
    0.808
xapE
Phosphoglycosyl-diphosphate--polyprenyl- phosphate phosphoglycosyltransferase, putative; Belongs to the UbiA prenyltransferase family.
  
    0.791
GSU1508
Hypothetical protein; xapK.
 
  
 0.789
xapJ
ADP-heptose--lipopolysaccharide heptosyltransferase, putative.
  
  
 0.787
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.