STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GSU1512Hypothetical protein. (454 aa)    
Predicted Functional Partners:
GSU1513
SAM-dependent methyltransferase, type 11.
 
  
 0.812
GSU1514
ADP-heptose--lipopolysaccharide heptosyltransferase, putative.
       0.773
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
  
 0.768
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
  
 0.720
GSU2386
UroD-like decarboxylase/methyltransferase, putative; Belongs to the uroporphyrinogen decarboxylase family.
  
  
 0.719
GSU0124
Amidophosphoribosyltransferase, putative.
  
    0.640
korD
2-oxoglutarate:ferredoxin oxidoreductase, ferredoxin subunit.
   
    0.604
GSU1511
Glycosyltransferase.
  
  
 0.602
hemD
Uroporphyrinogen III C2,C7-methyltransferase and uroporphyrinogen III synthase.
  
  
 0.556
GSU1362
Hypothetical protein.
  
    0.542
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.