Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GSU1964Hypothetical protein. (360 aa)    
Predicted Functional Partners:
GSU1956
Acetyltransferase, GNAT family.
  
    0.759
GSU1965
Polysaccharide pyruvyl transferase-related domain protein.
  
    0.683
GSU1963
Undecaprenyl-diphospho-oligosaccharide flippase.
  
    0.665
GSU1962
Glycosyltransferase.
       0.646
GSU1961
Glycosyltransferase.
  
    0.563
cysE-2
Serine O-acetyltransferase.
  
    0.537
GSU1966
Hypothetical protein.
       0.499
GSU1954
O-antigen polymerase, putative.
  
    0.490
GSU1955
Adenylyltransferase, putative.
  
    0.484
GSU1957
Glycosyltransferase, WbnK-like family.
  
    0.472
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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