Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GSU1966Hypothetical protein. (447 aa)    
Predicted Functional Partners:
GSU1967
Membrane protein, putative.
  
    0.860
GSU1972
N-acetylneuraminate cytidylyltransferase.
 
    0.639
GSU1965
Polysaccharide pyruvyl transferase-related domain protein.
  
    0.635
neuB
N-acetylneuraminate synthase.
 
    0.628
GSU1969
Hypothetical protein.
  
    0.621
GSU1968
Nucleotidyltransferase, CBS domain pair and CBS domain pair-containing.
  
    0.617
flaG
Flagellar protein FlaG.
  
   0.559
GSU1964
Hypothetical protein.
       0.499
GSU1971
Hypothetical protein.
  
   0.497
GSU1974
Aminotransferase, AHBA_syn family; Belongs to the DegT/DnrJ/EryC1 family.
 
    0.493
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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