Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GSU1980Polysaccharide deacetylase and DUF3473 domain protein. (301 aa)    
Predicted Functional Partners:
epsH
Exopolysaccharide synthesis membrane protein H (exosortase).
 
    0.951
GSU1981
Hypothetical protein.
 
    0.924
GSU1977
Glycosyltransferase, CESA-like subfamily.
 
  
 0.901
epsI
Exopolysaccharide synthesis periplasmic protein I.
 
    0.898
GSU1984
Polysaccharide chain length determinant protein.
 
    0.880
GSU1976
Glycosyltransferase, YqgM-like family.
    0.875
GSU1986
Undecaprenyl-phosphate glycosylphosphotransferase.
 
  
 0.852
GSU1983
Protein tyrosine kinase, putative.
 
    0.850
GSU1982
ATPase, putative.
 
    0.848
GSU1985
Periplasmic polysaccharide biosynthesis/export protein.
 
  
 0.817
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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