Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GSU1981Hypothetical protein. (409 aa)    
Predicted Functional Partners:
epsH
Exopolysaccharide synthesis membrane protein H (exosortase).
 
    0.929
GSU1980
Polysaccharide deacetylase and DUF3473 domain protein.
 
    0.924
epsI
Exopolysaccharide synthesis periplasmic protein I.
 
    0.881
GSU1984
Polysaccharide chain length determinant protein.
 
  
 0.880
GSU1987
TPR domain lipoprotein.
 
    0.845
GSU1985
Periplasmic polysaccharide biosynthesis/export protein.
 
    0.838
GSU1975
NAD-dependent nucleoside diphosphate-sugar epimerase/dehydratase.
  
    0.797
GSU1977
Glycosyltransferase, CESA-like subfamily.
  
    0.796
GSU1986
Undecaprenyl-phosphate glycosylphosphotransferase.
 
    0.791
GSU1941
Sensor histidine kinase, GAF domain-containing; Domains: GAF, HisKA, HATPase_c.
 
    0.777
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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