STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GSU1985Periplasmic polysaccharide biosynthesis/export protein. (282 aa)    
Predicted Functional Partners:
GSU1984
Polysaccharide chain length determinant protein.
 
 
 0.989
GSU1849
Hypothetical protein.
  
  
 0.972
GSU1986
Undecaprenyl-phosphate glycosylphosphotransferase.
 
  
 0.951
GSU1983
Protein tyrosine kinase, putative.
 
 
 0.949
GSU1987
TPR domain lipoprotein.
 
  
 0.913
epsH
Exopolysaccharide synthesis membrane protein H (exosortase).
 
    0.834
GSU1981
Hypothetical protein.
 
    0.824
xapH
ABC transporter, ATP-binding protein.
  
  
 0.820
GSU1980
Polysaccharide deacetylase and DUF3473 domain protein.
 
  
 0.818
GSU2248
Hypothetical protein.
  
  
 0.809
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.