Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GSU1996Cytochrome c; 12 heme-binding sites. (343 aa)    
Predicted Functional Partners:
GSU0357
Cytochrome c nitrite reductase; 8 heme-binding sites; Belongs to the cytochrome c-552 family.
  
 
 0.777
GSU2175
TrfA family protein.
  
    0.757
GSU3278
Pentapeptide repeat protein.
  
    0.756
omcN
Lipoprotein cytochrome c; 34 heme-binding sites.
  
   
 0.754
GSU1924
IPT/TIG domain protein.
  
     0.753
GSU1932
SPOR domain protein.
  
     0.744
GSU3549
Hypothetical protein.
  
     0.742
GSU1397
ABC transporter, periplasmic substrate-binding protein, 1 heme-binding site.
  
    0.726
GSU0702
Lipoprotein cytochrome c; 35 heme-binding sites.
  
   
 0.714
GSU1869
Lipoprotein, putative.
  
    0.712
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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