Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GSU2129Hypothetical protein. (102 aa)    
Predicted Functional Partners:
GSU2469
Hypothetical protein.
   
    0.923
GSU2131
Hypothetical protein.
  
  
 0.833
GSU2134
Nitrogen regulatory protein P-II, putative; Belongs to the P(II) protein family.
  
  
 0.765
GSU2135
Efflux pump, RND family, inner membrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
  
 0.700
GSU2133
Lipoprotein, putative.
  
  
 0.644
GSU1948
Hypothetical protein.
   
    0.622
GSU3559
Hypothetical protein.
       0.613
GSU2132
Hypothetical protein.
  
    0.570
GSU0958
Hypothetical protein.
   
    0.556
GSU0045
Hypothetical protein.
   
    0.523
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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