Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GSU2148Hypothetical protein. (139 aa)    
Predicted Functional Partners:
GSU2149
Helix-turn-helix transcriptional regulator, ArsR family.
  
    0.802
GSU2911
Hypothetical protein.
  
    0.720
omcN
Lipoprotein cytochrome c; 34 heme-binding sites.
  
     0.716
omcH
Cytochrome c; 24 heme-binding sites.
  
    0.714
GSU1845
Hypothetical protein.
  
    0.710
GSU2224
Response regulator, PATAN and FRGAF domain-containing; Domains: PATAN, REC, FRGAF.
  
    0.695
pgcA
Lipoprotein cytochrome c; 3 heme-binding sites.
  
    0.657
GSU1648
Cytochrome c; 5 heme-binding sites.
  
    0.639
GSU2906
Cupin superfamily barrel domain protein.
  
     0.610
GSU1786
Cytochrome c; 8 heme-binding sites.
  
    0.603
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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