Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GSU2149Helix-turn-helix transcriptional regulator, ArsR family. (124 aa)    
Predicted Functional Partners:
GSU0399
Helix-turn-helix transcriptional regulator, ArsR family.
  
   
 0.888
GSU2148
Hypothetical protein.
  
    0.802
GSU2147
Heavy metal-translocating P-type ATPase.
 
  
 0.781
copA
Copper-translocating P-type ATPase.
  
  
 0.613
GSU2625
Helix-turn-helix transcriptional regulator, ArsR family.
  
    0.487
GSU2146
Protein of unknown function, DUF302-containing.
  
    0.471
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
  
    0.462
GSU3029
[acyl-]glycerolphosphate acyltransferase and acyl-(acyl carrier protein) ligase, major facilitator superfamily domain-containing.
     
 0.453
GSU3564
Hypothetical protein.
       0.411
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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