Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GSU2175TrfA family protein. (279 aa)    
Predicted Functional Partners:
GSU1397
ABC transporter, periplasmic substrate-binding protein, 1 heme-binding site.
  
     0.772
omcQ
Lipoprotein cytochrome c; 12 heme-binding sites.
  
    0.764
GSU2122
TraG family protein.
  
    0.763
GSU1996
Cytochrome c; 12 heme-binding sites.
  
    0.757
GSU2107
Hypothetical protein.
  
  
 0.756
GSU1932
SPOR domain protein.
  
     0.745
GSU2108
Hypothetical protein.
  
    0.745
GSU1924
IPT/TIG domain protein.
  
    0.740
ompB
Laccase family multicopper oxidase.
  
     0.739
GSU3278
Pentapeptide repeat protein.
  
     0.739
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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