STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GSU2175TrfA family protein. (279 aa)    
Predicted Functional Partners:
GSU1397
ABC transporter, periplasmic substrate-binding protein, 1 heme-binding site.
  
     0.772
omcQ
Lipoprotein cytochrome c; 12 heme-binding sites.
  
    0.764
GSU2122
TraG family protein.
  
    0.764
GSU1996
Cytochrome c; 12 heme-binding sites.
  
     0.757
GSU1932
SPOR domain protein.
  
     0.745
GSU1924
IPT/TIG domain protein.
  
    0.740
ompB
Laccase family multicopper oxidase.
  
     0.739
GSU3278
Pentapeptide repeat protein.
  
     0.739
GSU2154
Hypothetical protein.
  
    0.717
fliO
Flagellar biogenesis protein FliO.
  
     0.705
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.