Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GSU2183Fic family protein. (491 aa)    
Predicted Functional Partners:
GSU2105
Hypothetical protein.
 
   
 0.770
GSU0064
Integrase, bacteriophage P4-type; Belongs to the 'phage' integrase family.
  
  
 0.738
GSU2601
TPR domain/SEC-C motif domain protein.
      
 0.732
lpdA-2
Dihydrolipoamide dehydrogenase.
   
  
 0.731
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
    
 
 0.626
GSU2182
Hypothetical protein.
  
    0.520
GSU2377
Hypothetical protein.
   
    0.454
GSU1849
Hypothetical protein.
  
  
 0.452
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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