Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GSU2188ABC transporter, ATP-binding protein. (232 aa)    
Predicted Functional Partners:
GSU3485
ABC transporter, membrane protein.
 
 0.959
GSU2187
ABC transporter, membrane protein.
 
  
 0.877
GSU2186
Hypothetical protein.
 
  
 0.869
GSU0677
ABC transporter, membrane protein.
 
 0.845
GSU1340
ABC transporter, membrane protein.
 
 
 0.742
GSU1164
ABC transporter, membrane protein.
 
 
 0.686
lolE
Lipoprotein release ABC transporter, membrane protein.
 
 
 0.669
GSU1163
ABC transporter, membrane protein.
 
 0.639
GSU2189
Sensor histidine kinase; Domains: HATPase_c.
  
   0.598
GSU0948
ABC transporter, membrane protein, putative.
  
 
 0.587
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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