Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GSU2201Cytochrome c; 8 heme-binding sites. (456 aa)    
Predicted Functional Partners:
nuoBCD
NADH dehydrogenase I, B/C/D subunits; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 20 kDa subunit family. In the C-terminal section; belongs to the complex I 49 [...]
   
   0.909
GSU0593
Cytochrome b, putative.
 
  
 0.729
hoxF
Bidirectional NAD-reducing hydrogenase, diaphorase subunit.
   
   0.713
GSU0594
Cytochrome c; 7 heme-binding sites.
  
  
 0.693
GSU0702
Lipoprotein cytochrome c; 35 heme-binding sites.
  
    0.657
GSU2199
Protein of unknown function DUF3373.
 
    0.655
fdnI
Periplasmically oriented, membrane-bound formate dehydrogenase, b-type cytochrome subunit, putative.
 
     0.648
GSU2210
Cytochrome c; 27 heme-binding sites.
  
   
 0.638
GSU1556
Lipoprotein, putative.
  
    0.630
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
    0.629
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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