STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
omcLOuter membrane channel cytochrome c, 1 heme-binding site. (675 aa)    
Predicted Functional Partners:
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.834
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
    
 
 0.794
omcK
Lipoprotein cytochrome c; 10 heme-binding sites.
  
    0.730
GSU1884
P-loop-containing kinase UPF0042; Displays ATPase and GTPase activities.
   
 
 0.656
omcM
Cytochrome c; 6 heme-binding sites.
   
  
 0.621
omcI
Lipoprotein cytochrome c; 10 heme-binding sites.
     
 0.608
GSU1409
NifU-like domain protein.
      
 0.598
omcP
Cytochrome c; 4 heme-binding sites.
   
  
 0.598
omcJ
Cytochrome c; 6 heme-binding sites.
      
 0.591
omcH
Cytochrome c; 24 heme-binding sites.
      
 0.551
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.