STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GSU2808Lipoprotein cytochrome c; 6 heme-binding sites. (189 aa)    
Predicted Functional Partners:
rpmE
Ribosomal protein L31; Binds the 23S rRNA.
   
  
 0.594
GSU1062
Cytochrome c, 1 heme-binding site.
      
 0.591
omcQ
Lipoprotein cytochrome c; 12 heme-binding sites.
   
  
 0.540
GSU2513
Lipoprotein cytochrome c, 1 heme-binding site.
   
  
 0.527
ycbK
Protein of unknown function YcbK.
  
    0.482
GSU2811
Cytochrome c; 2 heme-binding sites.
     
 0.482
ccpA
Cytochrome c peroxidase; 2 heme-binding sites.
     
 0.443
fur-2
Transcriptional regulator, Fur family; Belongs to the Fur family.
  
    0.431
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.