Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GSU2811Cytochrome c; 2 heme-binding sites. (467 aa)    
Predicted Functional Partners:
ccpA
Cytochrome c peroxidase; 2 heme-binding sites.
  
    0.920
GSU2812
Glutaredoxin family protein.
  
    0.734
GSU3254
Mannose-1-phosphate guanylyltransferase and mannose-6-phosphate isomerase-related protein.
   
    0.626
GSU1740
Cytochrome c, 1 heme-binding site.
  
  
 0.607
GSU2743
Cytochrome c, 1 heme-binding site.
  
  
 0.599
GSU0068
Cytochrome c; 4 heme-binding sites.
   
  
 0.580
GSU2724
Cytochrome c; 15 heme-binding sites.
  
  
 0.515
GSU1253
Hypothetical protein.
 
 
 0.482
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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