Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
omcPCytochrome c; 4 heme-binding sites. (279 aa)    
Predicted Functional Partners:
omcO
Cytochrome c; 27 heme-binding sites.
 
  
 0.949
GSU0616
Cytochrome c; 8 heme-binding sites.
  
   0.822
GSU0615
Cytochrome c; 11 heme-binding sites.
  
   0.805
GSU3223
Cytochrome c; 5 heme-binding sites.
  
   0.804
pgcA
Lipoprotein cytochrome c; 3 heme-binding sites.
  
   
 0.798
GSU2914
NHL repeat domain protein.
 
    0.795
omcA
Cytochrome c; 27 heme-binding sites.
 
  
 0.794
GSU1786
Cytochrome c; 8 heme-binding sites.
  
   
 0.788
GSU3218
Cytochrome c; 15 heme-binding sites.
  
   0.783
GSU0702
Lipoprotein cytochrome c; 35 heme-binding sites.
 
    0.769
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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