STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tklGType II secretion system pseudopilin TklG. (177 aa)    
Predicted Functional Partners:
gspJ
Type II secretion system minor pseudopilin GspJ.
  
 
 0.829
pulQ
Type II secretion system secretin lipoprotein PulQ; Belongs to the bacterial secretin family.
 
  
 0.817
pulG
Type II secretion system pseudopilin PulG.
 
     0.804
tklB
Transketolase, B protein.
  
    0.776
oxpG
Type II secretion system pseudopilin OxpG.
 
  
 0.690
GSU0370
FliK domain protein.
  
     0.689
tklA
Transketolase, A protein.
  
    0.651
pulE
Type II secretion system ATPase PulE.
 
 
 0.614
GSU1657
Competence protein, ComEC-related, putative.
  
  
 0.609
gspK
Type II secretion system minor pseudopilin GspK.
  
 
 0.586
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.