STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GSU2982Ligand-gated TonB-dependent outer membrane channel. (699 aa)    
Predicted Functional Partners:
GSU2981
Periplasmic energy transduction protein, TonB-related protein.
 
 
 0.970
pilQ
Type IV pilus secretin lipoprotein PilQ; Belongs to the bacterial secretin family.
  
 
 0.899
GSU0026
Periplasmic energy transduction protein, TonB-related protein.
  
 
 0.888
GSU0858
Periplasmic energy transduction protein, TonB-related protein.
  
 
 0.888
GSU1932
SPOR domain protein.
    
 
 0.841
GSU3176
LysM domain protein.
    
 
 0.841
GSU0027
Biopolymer transport membrane protein, TolR-related protein.
  
  
 0.692
ompB
Laccase family multicopper oxidase.
  
   
 0.692
GSU0698
HEAT-like repeat-containing protein.
  
    0.592
GSU0028
Biopolymer transport membrane proton channel, TolQ-related protein.
  
  
 0.584
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.