Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
tssMType VI secretion system ATPase and inner membrane protein TssM. (1154 aa)    
Predicted Functional Partners:
GSU3167
Type VI secretion system DUF2094 and ImpA-related domain protein.
 
  
 0.981
tssL
Type VI secretion system inner membrane protein TssL.
 
 
 0.978
tssC
Type VI secretion system needle sheath protein TssC.
 
  
 0.966
tssD
Type VI secretion system needle tube protein TssD.
 
  
 0.959
tssB
Type VI secretion system needle sheath protein TssB.
 
  
 0.946
GSU3169
Protein of unknown function DUF4150.
 
  
 0.933
tssK
Type VI secretion system protein TssK.
 
  
 0.917
tssH
Type VI secretion system ATPase TssH, putative chaperone; Belongs to the ClpA/ClpB family.
 
  
 0.910
GSU3168
Hypothetical protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
    0.901
tssF
Type VI secretion system protein TssF.
 
  
 0.899
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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