STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tssBType VI secretion system needle sheath protein TssB. (161 aa)    
Predicted Functional Partners:
tssC
Type VI secretion system needle sheath protein TssC.
 
 
 0.999
tssE
Type VI secretion system needle hub protein TssE.
 
  
 0.990
tssD
Type VI secretion system needle tube protein TssD.
 
 
 0.990
tssK
Type VI secretion system protein TssK.
 
  
 0.988
tssG
Type VI secretion system protein TssG.
 
  
 0.971
tssL
Type VI secretion system inner membrane protein TssL.
 
  
 0.971
GSU3167
Type VI secretion system DUF2094 and ImpA-related domain protein.
 
  
 0.961
tssI
Type VI secretion system needle syringe protein TssI.
 
  
 0.951
tssF
Type VI secretion system protein TssF.
 
  
 0.934
tssM
Type VI secretion system ATPase and inner membrane protein TssM.
 
  
 0.932
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.