Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GSU3175Hypothetical protein. (151 aa)    
Predicted Functional Partners:
GSU2596
Lipoprotein, putative.
   
    0.923
GSU3176
LysM domain protein.
  
    0.769
vorD
2-oxoacid:ferredoxin oxidoreductase, ferredoxin subunit.
   
    0.697
GSU1540
Lipoprotein, putative.
   
    0.652
xapD
ABC transporter, ATP-binding protein.
   
    0.628
GSU0959
Hypothetical protein.
   
    0.558
ihfA-2
Integration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
   
    0.550
xapB
Membrane protein, putative.
   
    0.543
tssD
Type VI secretion system needle tube protein TssD.
  
    0.511
tssI
Type VI secretion system needle syringe protein TssI.
  
    0.475
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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