Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GSU3219Peptidase, CARDB domain repeat-containing, putative. (2030 aa)    
Predicted Functional Partners:
GSU0891
Serine protease, subtilase family, DUF11 domain-containing.
 
 
 0.650
tssM
Type VI secretion system ATPase and inner membrane protein TssM.
   
  
 0.627
GSU2075
Serine protease, subtilase family; Belongs to the peptidase S8 family.
 
 
 
 0.607
GSU3216
Sensor histidine kinase; Domains: HATPase_c.
 
    0.483
GSU3112
FtsK/SpoIIIE domain protein.
    
 
 0.470
yyaL
Thioredoxin domain protein YyaL.
    
   0.457
GSU2533
Hypothetical protein.
   
    0.454
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
 
 0.452
GSU3278
Pentapeptide repeat protein.
   
 
 0.448
GSU0883
Ligand-gated TonB-dependent outer membrane channel.
    
   0.433
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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