Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GSU3224Hypothetical protein. (677 aa)    
Predicted Functional Partners:
GSU3223
Cytochrome c; 5 heme-binding sites.
  
    0.762
GSU3226
Cytochrome c; 12 heme-binding sites.
  
    0.712
GSU3225
NHL repeat domain lipoprotein.
  
    0.709
GSU3222
NHL repeat domain lipoprotein.
  
    0.706
GSU2532
Periplasmic solute-binding protein.
   
    0.643
GSU2580
Hypothetical protein.
   
    0.620
pilD
Type IV prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
   
    0.614
GSU3221
Cytochrome c; 4 heme-binding sites.
  
    0.468
mcp34H-6
Methyl-accepting chemotaxis sensory transducer, class 34H.
   
    0.454
GSU2311
YeeE/YedE family protein.
   
    0.453
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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