Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GSU3225NHL repeat domain lipoprotein. (365 aa)    
Predicted Functional Partners:
GSU3226
Cytochrome c; 12 heme-binding sites.
 
    0.930
GSU3223
Cytochrome c; 5 heme-binding sites.
 
    0.879
GSU3221
Cytochrome c; 4 heme-binding sites.
 
    0.788
GSU3222
NHL repeat domain lipoprotein.
 
   
0.727
GSU3224
Hypothetical protein.
  
    0.709
GSU3218
Cytochrome c; 15 heme-binding sites.
 
    0.693
GSU0989
NHL repeat domain protein.
 
    0.658
omcE
Cytochrome c; 4 heme-binding sites.
  
     0.638
GSU1302
Sensor histidine kinase response regulator, HAMP domain-containing, putative heme-binding site; Domains: HAMP, HisKA, HATPase_c, REC.
  
    0.620
GSU1787
Cytochrome c; 4 heme-binding sites.
 
     0.616
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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