Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
prx-2Peroxiredoxin, typical 2-Cys subfamily. (201 aa)    
Predicted Functional Partners:
trx-2
Thioredoxin family protein; Belongs to the thioredoxin family.
  
 0.861
prx-4
Peroxiredoxin, 1-Cys subfamily.
 
 
 0.859
GSU2956
Redox-active disulfide protein 2.
  
 0.839
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 
 0.806
trxB
Thioredoxin reductase.
  
 
 0.799
sodA
Superoxide dismutase, iron/manganese-containing.
  
  
 0.795
GSU2002
FAD-dependent pyridine nucleotide-disulfide oxidoreductase family protein.
  
 
 0.782
GSU2612
Rubrerythrin.
  
  
 0.741
GSU2814
Rubrerythrin.
  
  
 0.741
GSU0066
Peroxiredoxin-like 2 family protein, selenocysteine-containing.
  
 
 0.720
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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