Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GSU3293Ferritin-like domain protein. (150 aa)    
Predicted Functional Partners:
fur-4
Transcriptional regulator, Fur family; Belongs to the Fur family.
  
  
 0.882
GSU3624
Rubredoxin.
  
  
 0.865
GSU3289
Ferritin-like domain protein.
  
  
 0.775
GSU2612
Rubrerythrin.
  
  
 0.656
GSU2814
Rubrerythrin.
  
  
 0.656
GSU0847
Rubredoxin.
  
  
 0.631
GSU3188
Rubredoxin.
  
  
 0.631
GSU0710
Hypothetical protein.
      
 0.580
GSU1572
RibD_C domain protein.
      
 0.580
GSU2093
ABC transporter, ATP-binding protein.
      
 0.580
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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