STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GSU3332Lipoprotein cytochrome c; 2 heme-binding sites. (115 aa)    
Predicted Functional Partners:
GSU0616
Cytochrome c; 8 heme-binding sites.
      
 0.758
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
       0.749
GSU3330
NADH-dependent flavin oxidoreductase, Oye family.
       0.607
pepA
Cytosolic aminopeptidase, M17 family; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
      
 0.592
GSU1334
Cytochrome c; 8 heme-binding sites.
      
 0.591
omcF
Lipoprotein cytochrome c, 1 heme-binding site.
      
 0.591
aroG-1
3-deoxy-D-arabino-heptulosonate 7-phosphate synthase.
  
    0.488
GSU3335
Hypothetical protein.
  
    0.487
GSU1117
Response regulator, putative; Domains: REC.
   
    0.483
GSU0250
Protein of unknown function DUF2721.
   
    0.456
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.