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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GSU3370Helix-turn-helix transcriptional regulator, GntR family. (235 aa)    
Predicted Functional Partners:
ilvN
Acetolactate synthase, small subunit.
   
    0.631
GSU0514
Helix-turn-helix transcriptional regulator, IclR family.
  
  
 0.573
GSU2354
Helix-turn-helix transcriptional regulator, IclR family.
  
  
 0.569
GSU1072
Helix-turn-helix transcriptional regulator, IclR family.
  
  
 0.564
GSU3109
Helix-turn-helix transcriptional regulator, IclR family.
  
  
 0.549
hemK
Peptide chain release factor methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
   
   0.517
GSU3371
TIM barrel protein, AP endonuclease family 2/xylose isomerase-like family.
  
    0.493
GSU0267
Helix-turn-helix transcriptional regulator, UTRA domain-containing, GntR family.
 
   
 0.465
putA
Proline dehydrogenase and Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
  
 0.463
GSU1626
Helix-turn-helix transcriptional regulator, GntR family.
 
  
0.461
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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