Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GSU3485ABC transporter, membrane protein. (408 aa)    
Predicted Functional Partners:
GSU3484
ABC transporter, ATP-binding protein.
 
 0.997
GSU1341
ABC transporter, ATP-binding protein.
 
 0.982
GSU0496
Efflux pump, RND family, membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.978
GSU0678
ABC transporter, ATP-binding protein.
 
 0.978
GSU1162
ABC transporter, ATP-binding protein.
 
 0.971
GSU2413
ABC transporter, ATP-binding protein.
 
 0.964
GSU2188
ABC transporter, ATP-binding protein.
 
 0.959
lolD
Lipoprotein release ABC transporter, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
 0.957
GSU0947
ABC transporter, ATP-binding protein.
 
 0.956
GSU1261
ABC transporter, ATP-binding protein.
 
 0.956
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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