Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GSU3554Hypothetical protein. (129 aa)    
Predicted Functional Partners:
GSU2112
Hypothetical protein.
       0.773
GSU2113
Transcriptional regulator, putative.
       0.473
GSU2108
Hypothetical protein.
       0.419
GSU2109
Hypothetical protein.
       0.419
GSU2110
Hypothetical protein.
       0.419
GSU3553
Hypothetical protein.
       0.419
GSU2107
Hypothetical protein.
       0.414
GSU2105
Hypothetical protein.
       0.400
GSU2106
PglZ domain protein.
       0.400
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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