STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MJ_0011Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0011. (197 aa)    
Predicted Functional Partners:
MJ_1337
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1337.
 
    0.986
MJ_0008
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0008.
  
    0.894
apgM2
BcpC phosphonopyruvate decarboxylase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
 
     0.804
MJ_0009
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0009.
       0.778
MJ_0007
2-hydroxyglutaryl-CoA dehydratase, subunit beta (hgdB); Similar to GB:X14252 SP:P11570 PID:38802 percent identity: 22.79; identified by sequence similarity; putative.
 
    0.700
MJ_1590
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1590.
  
    0.683
MJ_0990
Conserved hypothetical protein; Similar to GB:L13279 SP:P31065 PID:290415 GB:U00096 PID:1788239 percent identity: 39.13; identified by sequence similarity; putative; Belongs to the sulfur carrier protein TusA family.
       0.431
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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