STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
eif6Conserved hypothetical protein; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex; Belongs to the eIF-6 family. (228 aa)    
Predicted Functional Partners:
rpl31e
LSU ribosomal protein L31E; Similar to SP:P04649 PID:1431090 PID:4390 PID:625117 PID:625117 percent identity: 42.25; identified by sequence similarity; putative; Belongs to the eukaryotic ribosomal protein eL31 family.
  
 
 0.999
rpl18a
LSU ribosomal protein LXA; Similar to GB:X77509 SP:P38613 PID:453441 percent identity: 38.89; identified by sequence similarity; putative.
  
 
 0.998
rpl30e
LSU ribosomal protein L30E; Similar to SP:P14025 GB:X15970 PID:44782 percent identity: 64.71; identified by sequence similarity; putative; Belongs to the eukaryotic ribosomal protein eL30 family.
  
 
 0.995
rpl3
LSU ribosomal protein L3P (rplC); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
 
 
 0.994
rpl7ae
LSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs; Belongs to the eukaryotic ribosomal protein eL8 family.
 
 
 0.993
rpl34e
LSU ribosomal protein L34E; Similar to GB:L38941 SP:P49207 PID:1008856 percent identity: 36.59; identified by sequence similarity; putative; Belongs to the eukaryotic ribosomal protein eL34 family.
 
 
 0.990
rpl24e
LSU ribosomal protein L24E; Binds to the 23S rRNA.
 
 
 0.990
rpl14
LSU ribosomal protein L14P (rplN); Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
 
 0.988
rpl1
LSU ribosomal protein L1P (rplA); Probably involved in E site tRNA release (By similarity). Binds directly to 23S rRNA.
  
 
 0.985
rpl14e
LSU ribosomal protein L14E; Similar to SP:P36105 SP:P38754 PID:2131109 PID:485979 PID:500817 percent identity: 36.36; identified by sequence similarity; putative; Belongs to the eukaryotic ribosomal protein eL14 family.
  
 
 0.983
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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