Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
MJ_0065 | MJ_0066 | Conserved hypothetical protein; Similar to GB:AE000666 percent identity: 48.48; identified by sequence similarity; putative. | Sulfate adenylate transferase, subunit 2 (cysD); Similar to SP:Q10599 PID:1322409 percent identity: 28.80; identified by sequence similarity; putative; In the C-terminal section; belongs to the PAPS reductase family. | 0.569 |
MJ_0065 | MJ_0067 | Conserved hypothetical protein; Similar to GB:AE000666 percent identity: 48.48; identified by sequence similarity; putative. | Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0067. | 0.412 |
MJ_0066 | MJ_0065 | Sulfate adenylate transferase, subunit 2 (cysD); Similar to SP:Q10599 PID:1322409 percent identity: 28.80; identified by sequence similarity; putative; In the C-terminal section; belongs to the PAPS reductase family. | Conserved hypothetical protein; Similar to GB:AE000666 percent identity: 48.48; identified by sequence similarity; putative. | 0.569 |
MJ_0066 | MJ_0067 | Sulfate adenylate transferase, subunit 2 (cysD); Similar to SP:Q10599 PID:1322409 percent identity: 28.80; identified by sequence similarity; putative; In the C-terminal section; belongs to the PAPS reductase family. | Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0067. | 0.565 |
MJ_0067 | MJ_0065 | Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0067. | Conserved hypothetical protein; Similar to GB:AE000666 percent identity: 48.48; identified by sequence similarity; putative. | 0.412 |
MJ_0067 | MJ_0066 | Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0067. | Sulfate adenylate transferase, subunit 2 (cysD); Similar to SP:Q10599 PID:1322409 percent identity: 28.80; identified by sequence similarity; putative; In the C-terminal section; belongs to the PAPS reductase family. | 0.565 |