Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MJ_0090Collagenase (prtC); Similar to GB:L42023 SP:P44700 PID:1003722 PID:1222349 PID:1204669 percent identity: 37.07; identified by sequence similarity; putative; Belongs to the peptidase U32 family. (407 aa)    
Predicted Functional Partners:
MJ_1302
Photosystem I iron-sulfur center 1 isolog; Identified by sequence similarity; putative.
  
 
 0.688
MJ_0091
Na+/Ca+ exchanger protein, putative; Similar to SP:P45394 PID:606134 GB:U00096 PID:1789587 percent identity: 31.58; identified by sequence similarity; putative.
       0.648
MJ_0092
Heterodisulfide reductase, subunit D (hdrD); Similar to GP:1890198 percent identity: 31.87; identified by sequence similarity; putative; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
 
     0.598
MJ_0089
Ferric enterobactin transport ATP-binding protein; Similar to SP:P23878 GB:X57471 PID:41432 GB:U00096 PID:1778504 percent identity: 33.07; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
       0.566
MJ_0088
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0088.
       0.553
MJ_0087
Hemin permease (hemU); Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
     
 0.540
pcm
L-isoaspartyl protein carboxyl methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins (By similarity).
  
   0.517
MJ_0086
Unspecified methyltransferase; Similar to PIR:S21265 percent identity: 25.50; identified by sequence similarity; putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.
       0.471
MJ_0085
Iron transport periplasmic binding protein, putative (ceuE); Similar to PID:1107531 percent identity: 25.10; identified by sequence similarity; putative.
       0.424
MJ_0867
Conserved hypothetical protein; Catalyzes the methylthiolation of N6- threonylcarbamoyladenosine (t(6)A), leading to the formation of 2- methylthio-N6-threonylcarbamoyladenosine (ms(2)t(6)A) at position 37 in tRNAs that read codons beginning with adenine.
 
  
 0.403
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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